NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0077123_109126

Scaffold Ga0077123_109126


Overview

Basic Information
Taxon OID3300005745 Open in IMG/M
Scaffold IDGa0077123_109126 Open in IMG/M
Source Dataset NameMicrobial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS844
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2594
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Diffuse Flow Fluid → Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean

Source Dataset Sampling Location
Location NameMid-Cayman Rise
CoordinatesLat. (o)18.374735Long. (o)-81.797326Alt. (m)Depth (m)2376
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013484Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0077123_1091262F013484N/AMDIHLEFSGRTLSTEHQAIVDALNEFLAWLPDGEDPNAALRLAMMILEAANVAPQAVLAQAVGFGQDRSVRVYKQRLREEGLSGLFDHPIPGRPALTTKTEVEKALLRVILSAVIEEHALPDDVTLAEGVNRILREAQEPEAGHVTASMIEAIRLRWGIQRPTLVRQLQATQLAATAERAQMRLGQTRVGGAFILAVLLVETGWLKLAYLLPMAANYAVTAVQWLLTAIFAVIFGVQRAFHLDDVRDIGFALVTGRPRPLTHGTFQHLLHAIPKEKAQAFYAASAQLEVQALGEGPRRISLDGHNLPRYTRLVDLPKGKIGNTGRILKAEELVLAYDLDAHLWLALRVYRGTKKLSQGLVEMVREILKHRGDIPGRLRVFFDKGGYSGQIFRDLAEESQVRFYTPAVRYPANVELWEQLKDSDFDPEPFAFDKHADLPPDQRPVYRLADTEMTLNVRADRKVVDTVTLRAIVLHDPQGEKPAERWPVVFLTDDRDIDARALLNEFGDHWGQEFAHRIGKHDLCLDILPPGYVLKTRQDEQGQQVREVEYDNTAFFLSAWLRCLVFNLMTCFAQAMGREYSKMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPGQDELQPLLDKLNAKRTALPWLNNLVVQFSIAQDEPLHPLTEPEKRNRLFGDD*
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