NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076919_1038010

Scaffold Ga0076919_1038010


Overview

Basic Information
Taxon OID3300005731 Open in IMG/M
Scaffold IDGa0076919_1038010 Open in IMG/M
Source Dataset NameSeawater microbial communities from Vineyard Sound, MA, USA - succinate ammended T14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3337
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → M → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.4417Long. (o)-70.7744Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019312Metagenome / Metatranscriptome230N
F031655Metagenome / Metatranscriptome182Y
F039095Metagenome164N
F063568Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0076919_10380101F019312N/AMMTHTQAIYKAQIVFEEALSDKETIDKLLHIDAQMYANTGLETSKAEMESIKRASAFIYRLIKGIDYDKGQRFIQGMGLTR*
Ga0076919_103801010F039095N/AMDKLKEEDYSWVRGGSKSIALLWLRQKNQDLMEIANALKPQDPSNEYEMDIFIDLVSIYSAIDASIGMVEDVQKMVWEAEAKNADLKLTIRNLTRKINAYEERFDNLNEHLK*
Ga0076919_10380105F063568AGAAGMENTKVSKLLLVWLWTQGHKVKEYKEAEGITTVHGKEEYKFDVSGNYGGFRVEYTHNRFSFYDGDKKLKDTDLNEFR*
Ga0076919_10380108F031655N/AMNFAIDIAPLAGLLVGANYWNSEMNEDFENPKYHSLQLCFGVFAIVITWATEE*
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