NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076919_1024004

Scaffold Ga0076919_1024004


Overview

Basic Information
Taxon OID3300005731 Open in IMG/M
Scaffold IDGa0076919_1024004 Open in IMG/M
Source Dataset NameSeawater microbial communities from Vineyard Sound, MA, USA - succinate ammended T14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27935
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (7.32%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → M → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.4417Long. (o)-70.7744Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053385Metagenome / Metatranscriptome141Y
F064877Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0076919_102400421F053385N/AMNLILTLGFLTGLSFGSYQFCNWYACNNWYACNNWYACNNWLSFMRADLIRNACTDANYQTSIYGIIFTLITYQFTILINKVSSQTDTYIFEDYSLGKKSPRSLKKV*
Ga0076919_102400439F064877N/AMTSMEEQSRCFYLDSDYQPASDMLRKCVGDNTSPYRFNCGDDPMRQELPEDVKETARMNDISIQRGFSYYNVDNHNVNSFSDKPNIIKKPSNTMNSYGVEGFQNQFITDNGLGESSIPKGECPEGYSRDLVSGKCMQKCIGCVYRDNMKSREFNEADPCFPNGVYNGLNSDGFIKCTCGRDNKYCSDNFIKNIFTTDGMMISGQKIIMNTGLTKKVNEMFNFNYL*
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