NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078894_10402877

Scaffold Ga0078894_10402877


Overview

Basic Information
Taxon OID3300005662 Open in IMG/M
Scaffold IDGa0078894_10402877 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1236
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011761Metagenome / Metatranscriptome287Y
F032663Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0078894_104028771F032663AGGAMSVPYQRISNATVADIQFYDPAAERRAAALNVDWAPYFKVSSQEWLYKMEFGFWQKYCDTVIGATYYTNLPDGQLISSFNPSLLIKNDQTLIRLDTFGAILVFYE
Ga0078894_104028772F011761N/AYADYNPAGSGGTWGTGNAVVQNPSLEQGSITATPAVATTAFDIFYGWTTSFQLAATLGAELGDSFAEKVDQRVTAAFLGFKATPGNTYYTDTPADGFPRVLQLGAMELAESGNALANATVGFSDNTVLGTIRNVKQNFKVARMPGSPVIVLDSNGSAEGTVSGQTGSSLNRLLAELTGGAVSQSGGSNLSALGNELLSSGKIESVYGCMVMFTTFLQTASRTFLGVATQSVLVGAYFGDSALFTVLKDGLQIKTGETPGGLQNWLTGVGYFGAGVGDLRRGGAINIQQ*
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