| Basic Information | |
|---|---|
| Taxon OID | 3300005613 Open in IMG/M |
| Scaffold ID | Ga0074649_1022598 Open in IMG/M |
| Source Dataset Name | Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3483 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Greece: Etoliko Lagoon | |||||||
| Coordinates | Lat. (o) | 38.4825 | Long. (o) | 21.315 | Alt. (m) | Depth (m) | 25 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000545 | Metagenome / Metatranscriptome | 1038 | Y |
| F000645 | Metagenome / Metatranscriptome | 962 | Y |
| F002241 | Metagenome / Metatranscriptome | 579 | Y |
| F005585 | Metagenome / Metatranscriptome | 395 | Y |
| F013317 | Metagenome / Metatranscriptome | 272 | Y |
| F014613 | Metagenome / Metatranscriptome | 261 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0074649_10225981 | F013317 | N/A | ARTGSKTLYINATPKGVYQFDLGAINEPEWALKRLPVTTDFANRETNERLAGFLDIRLADLLLV* |
| Ga0074649_10225983 | F014613 | GAG | MLPNLSDEAVVGIIIGVPFIGLYIWGLITSAKAKAFNEGYKRGRSSVRYTEILK* |
| Ga0074649_10225984 | F005585 | GAGG | MATRGTIFYAFSKSRQLSVFSSETHLNWHLLLLRQNSQEWWKVQSARIRISISLDMPLSWLDADSLHQKIGTTLSLTRNHNKNQYCDYCKYRWGQNKGVWDIRATTPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAINDFAGREKLNVELP* |
| Ga0074649_10225985 | F000645 | GAG | MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADAHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKPSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVSEIANQLGAEIIDEIPLCSGGDGPMVLKTGTKEGKEYRGWVCPTPKSGHPAKWMRIGSDGHWVFQK* |
| Ga0074649_10225986 | F000545 | N/A | MRSDAHPFICSACKLVTPHIELHKYDASDIAEAPEEVWLVECQRCFMQRIIYPADRVTAKEDDIVRCDQCGKWKMKAAKCRICRLAAGLESISERYWTGNETLERPYNAAL* |
| Ga0074649_10225987 | F002241 | AGG | VESLETQPNPLQRRRLGRKGQMSKPHSIRYIRQLMEWGFDKEFIAKDCGINLESLETRLRRANERERRNGNQGTESGTSGSQPNS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |