NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0070723_10026439

Scaffold Ga0070723_10026439


Overview

Basic Information
Taxon OID3300005612 Open in IMG/M
Scaffold IDGa0070723_10026439 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2144
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location
Location NameAtlantic Coast
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071256Metagenome122N
F103552Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0070723_100264392F071256N/AMKQTSNKVATTAKVAEGTKSNVKAVSAPTQSAEVKATLKALRATAPIVKLNESIKKGSVEMFHKSLKLGTLLSARLDAFNAPEFKAFIKADGRKVKDERERLWDAIEMSKSYFHRHATAGKFLIGDADSGAEFVLYRDAMLALDERCALDVDAYNAWMKDEKPAAAVPVKEESVAEGEADGEVEGDEALEFTDEEMAGVAAQFVVSTDAVSGSIHFNDDATKKAVNGNEQLLKAMLAKCATSLGLVCMTVDEFDAVMTSGVEA*
Ga0070723_100264393F103552AGGMDKMDVVGLDHKDLLLERDGNSFRLEHRLQLSKHSLTRIDCVLYLIGVAEDGSRHTIKIWGVEELEPFTRWYWKKYGEASNLDYKGETKKKDALLDVFLAD*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.