| Basic Information | |
|---|---|
| Taxon OID | 3300005611 Open in IMG/M |
| Scaffold ID | Ga0074647_1001405 Open in IMG/M |
| Source Dataset Name | Saline surface water microbial communities from Etoliko Lagoon, Greece |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9665 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (80.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Etoliko Lagoon, Greece | |||||||
| Coordinates | Lat. (o) | 38.4825 | Long. (o) | 21.315 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008346 | Metagenome | 335 | Y |
| F012117 | Metagenome / Metatranscriptome | 283 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0074647_100140510 | F012117 | GGAG | MVDILGGMSNPNSESQQVYLAFKTSHQQFFANGETPVEFQYLQLDPSTFKSGWGRYTKADGFEYHWDNKFGVVSPKPADDYKRAFSAWVFPQGAQHAYLWQRFTYAESSAFNSLLATFWNQMDASSASLPVVKFEGSKPIQVGMGNSSELTFSFAKFAPRSDGFVIPQWYLDQEAPVEDTFKSPNDGLSDKVAEMVSQNELTDDDIPF* |
| Ga0074647_100140515 | F008346 | GAGG | MPIKLKPSVKIRDRATGKTATEHYYLKCMTPKELNDYIKSPSSKKKVIQKCKNEIIRRRYDK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |