NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074647_1000279

Scaffold Ga0074647_1000279


Overview

Basic Information
Taxon OID3300005611 Open in IMG/M
Scaffold IDGa0074647_1000279 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)32592
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameEtoliko Lagoon, Greece
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004343Metagenome / Metatranscriptome442Y
F008887Metagenome / Metatranscriptome326Y
F029114Metagenome / Metatranscriptome189N
F029401Metagenome / Metatranscriptome188N
F043377Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0074647_100027916F029401GGTGGMTEAKVNDRTTFNISISYLVQIIIAIAAFVYGYASISEHIEKNDTEIKNLRSNQNNYIFPDIRLLEQKVIVLEKEVLVLQKEIEFYKKELQKQPTGK*
Ga0074647_100027930F043377AGGAGMNETLNEIIQDLADLSYTALDLKEDITTGEPSVETALEKINRIHRVLIFNQDKLIELTKGEE*
Ga0074647_100027932F004343GAGGMTQYKDMIDQARQLLRTERENAPSMSKDFSKDYWILTYPCGKIVKTYQDKRKKDIVIQESYSGGEL*
Ga0074647_100027933F008887GGGGGMSRGCCNECGYKADYIIDNNNYADNGYKDLNQVPKDKMLCGVCYEENENDS*
Ga0074647_100027943F029114GGAGMSEEKELTFTFDEDGKEYKVEDLSDENKILYNKVTLVNKQRLDVIANANFEVEKLEILGRHYSNALKEAVEGDDNKVEVVE*
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