NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070726_10230211

Scaffold Ga0070726_10230211


Overview

Basic Information
Taxon OID3300005600 Open in IMG/M
Scaffold IDGa0070726_10230211 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)941
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location
Location NameAtlantic Coast
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048642Metagenome / Metatranscriptome148Y
F075981Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0070726_102302111F048642N/AMATSFNLQEYILFRTEIKRELTNAEVDTNFKMVANPWENDRVYEIGNIVYHPVIVDDPTTTAIDQVLAWWRANVRTTQGVFNTAQWDMIGGIGSGNINIQGSVGFGKIKVNSTDATGPLQSGNDATLLSATPNDTFNFIAGQGMQLQYNLASKSIVVVNTLASNPG
Ga0070726_102302112F075981N/AIDNCFLGDLVSISFFLASSDLYDFTTEFKAMDVSTNLKLETGSAYDRQRNAGRKVLIDRQIQLIKNAVADYVKYYLELKYIYVTGIYSPCYAVPGWSENTWYLKSFRDAFISSRNTSEFPYNDLRIEEFPPK*

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