| Basic Information | |
|---|---|
| Taxon OID | 3300005591 Open in IMG/M |
| Scaffold ID | Ga0070761_10000263 Open in IMG/M |
| Source Dataset Name | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35054 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (55.26%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New Hampshire, Hubbard Brook experimental Forest | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000858 | Metagenome / Metatranscriptome | 858 | Y |
| F007333 | Metagenome / Metatranscriptome | 353 | Y |
| F012132 | Metagenome / Metatranscriptome | 283 | Y |
| F014874 | Metagenome / Metatranscriptome | 259 | Y |
| F018974 | Metagenome / Metatranscriptome | 232 | Y |
| F024745 | Metagenome / Metatranscriptome | 204 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0070761_100002631 | F024745 | N/A | MAALAGAESLRFTTHKPVLDREFDAALPELRASRQTSTWSPKAGIYAAELLVTYELKKPHSWLPGGRLMREFWWAYPAVMVPIHIKNGIRSIRTQPPSCPVAECRGNRV |
| Ga0070761_1000026312 | F014874 | GAG | MSDAFQADVLAEETHSGRVWSLIILLALIAPMMGVALVPSPVGHWALALVGILSIGTFAMSWSGFQYRFLRHGVEIRMLGFRLRSIPKQSIVSYSIEPWNLIRGYGIRGMGSTRAYVWCNQVVHIKTTNGDIFLGHNDPARIVRDLDMVTGAVTRG* |
| Ga0070761_1000026314 | F007333 | AGGAGG | VQEELHHARSLGLSVALGAAMGAALGAATGHMGVWVAAGIAAYIVISLVGGVWSKKPNDERRTTNH* |
| Ga0070761_1000026331 | F012132 | N/A | MTAAIPAAHAAPQGNPAGDAGQYGVCSKLGEYIFVGGTGGFDALRQGDLFEELLKTGHVGLYEHANAISAAENPPGLLTAIERVFRGTGPGEAELGQVGWNYFTLPPSYGYYQSLYIQNGLSPSEANVNTPSDSAAPGQLEEDLNKWKAYVDAARSVDIKSVAPVVGPNDPDEPKLGENVFATNPFYELERDEALYGRAIAFDVPPNFFLSGGSGPGYEKFVVQAIQWGNAHGLRTTMLVSPYPWPTNAAGRLETFRQFTDNTFSRDTQDFVNRLRAEHAVPSEWAVDNYEDTYPHDAPAMVPETVRNTTTEVGLWLARNAPVYAHGDDAEGVICLPPAGSLNAEPLATQP* |
| Ga0070761_1000026332 | F018974 | AGGAG | MDSRPSSEIRSSTGQRGMKLKTFLTTVMSLLSILVLGLGGVRKDVLWLWIGFLCCLVSGVFVQLFINRIKDEIASGRR* |
| Ga0070761_100002638 | F000858 | GGAG | MSGNGYLFAAYAVTWIIHIAYLGTIVRRYKRLQGEIEALKKTGPRS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |