NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070761_10000001

Scaffold Ga0070761_10000001


Overview

Basic Information
Taxon OID3300005591 Open in IMG/M
Scaffold IDGa0070761_10000001 Open in IMG/M
Source Dataset NameReference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)271038
Total Scaffold Genes230 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)176 (76.52%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Associated Families11

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000269Metagenome / Metatranscriptome1410Y
F000279Metagenome / Metatranscriptome1383Y
F002101Metagenome / Metatranscriptome593Y
F003337Metagenome / Metatranscriptome493Y
F006799Metagenome / Metatranscriptome364Y
F011102Metagenome / Metatranscriptome295Y
F014407Metagenome / Metatranscriptome263Y
F028559Metagenome / Metatranscriptome191Y
F032558Metagenome / Metatranscriptome179Y
F042478Metagenome / Metatranscriptome158Y
F043506Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0070761_1000000112F042478GAGMQYFAMDEQNRATQFMNGPENPIYTEVFPNEDFAATGYWFWLKSSTANGFDVKAFDQNYVYMRSTELVWTDNTTFKRFVTDLPIAARCVASDAPGPEIQVADTSFQYFSSCSPYKSSDLGTAVNDLDAPVLMDTGGNIGQVSTRVLHYRYNCDSAFQNCVNEEQFFLAAGYGQWQWKHYQNGILVNSTLINNIEPGTASGTLPCTQSYQ*
Ga0070761_10000001120F002101AGGAGMTTPVIALPLSTPEAAPAKKKRVLLLDTSQTKRELRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLINAAGETDSRDKFCIELRGATPPQRIAFFVGGPEYLAAAPHSDDAPAGPDADALHREMVAALIAQASGSSSQRWGILEACRKISSVRSVSEARSRAIRETPRPSRWAEAIEQHSLPEAPKPQSFFAPETAATETEIKREELL*
Ga0070761_10000001122F003337N/AMVVLCPFSLAAADTGSAVLHSQGGVWVNGFEIAASTAVFPGDVVETKPGFVANLDAEGSSVLIQPESIVKFEGTFLTLEHGSVSVGTSASMSVHVNCIKVEPVSNERTQYDVADVSGTVQVAARKNDVNITQGSVLQKPPQSGPSQAATVHEGQHATRDETTVCGAAQRPEGAGHALSAKWLEIGGGAGAGVLVLCLLFCSGSKPVSPAQP*
Ga0070761_1000000117F043506GAGGMKDADRKGAAVKTSWTILPFPCASSPTDRRALRKDLLIALRASGSPVIVDFSDCSTLNYEDIDLLLECVAQAAGRDTKVLFVAGSRVNRVLLEVTRISSLVPVFNSVEEALAYPQIAAEDAFEDRRAS*
Ga0070761_10000001188F032558GGAMSVEKINRSGSPQTEKKRAASAAGVQCLRCRSEIDSYAFTKFVFLPYGTAGGNIVLQCPKCGHIEFLAENSPLLRRLNAKPVAVGDGD*
Ga0070761_10000001226F000279GAGMTHKPEDGAIEEIILPENLLPLGSVLGEGVTPLDVSMTLAKVFNVQYAEVALLRLEGGLLKFIFPEHLRTTGAIPISSKAVAAHTALSKKAEIFNNFARVKHASIFETIKPVGDEAEVPAPPAPIQKLMSVPILDQHATVLGVIQISRKGTDPRFTQDFSREDLHDLEIAAGVLAGSPVMLEN*
Ga0070761_1000000123F028559N/AMSESQRSVGLQQIPDAAGPSGVTPFSIQGTMAKFLWTMILMVGCAQAQVAAPAASYPTSDDTAAQPTAAAADGMSPVSELAGKVGLVRGVLKRLDPIHDQLLIHAFGGGDIRIAFDARTQLLPENTGMHLMSLPAGSVVSVDTVIDNGKLFARAVRTSPSNAVELNGQVVRYDAAKSQLTLRYPMSPKSVALRITSGTVIVNRGQPGSPQDLSAGMLVRVQFSPAQSMANNSVANNNVANNVEILAERGNSFTFEGRIVAVDLRARVLALSNDSDQAVRELAIGSLDTTSLRLLREGADVSIQAEFDGDRYNVRTVTLVSRNP*
Ga0070761_100000017F006799AGGAGGMQLALQNAETINRLVEQGESLLKSFHDEHQKDPAAMETEFARGEVIGWRSTLHTLYRDCAEDIVNRVVTRTRLTIPDGEVPSGGIHAY*
Ga0070761_1000000193F014407GGAGGMRVSLGCMFGCTLLVLSALGVAFGQDTNFASGPQYLINPDPTNHASPLFARAISTPSLSLAGPPLEVGASDATGVLTPGAGDQNVVPPSPDALPKVDFSPIYYGSLPVSVVEISFPANSETSQNELPASILDTGVWQITTVQALRERGFGVTLPEAAANSRAHARHGTRVFTNADIDRLRSGS*
Ga0070761_1000000194F011102N/AMLNPAVISQGNSRPEPRKLFLRKQFVRRGGACLLEWRKVVCGVMIVILPTSVLAQDSSRAMLHSDGGVWLNGNPAPNSSAIFTNDLVQTQKGTTAKIDADGSTATVQSETIVQFDGDELALDHGGLELNTSRAMRVRVNCITVTPLSQEWTRYDVIDVDGRVTVAALEHDVRIHYRDGVARRSKEAGSSSDVTVHQGEQVTRDERCGAAVRDTRVVDADGAILNSVWAKAAGLTVIGVLTCWALCRGNEPVSPSAP*
Ga0070761_1000000199F000269N/AMKIPRAFQRTNVLALLLLLVPLASASEQPTPKPTDVPATVIAHLPLPQATGSQMLLQKVNGKQYLYIQQAAKQGFMVVDVSKADNPSLLKRTAESNQATAGSLQIVSPDVAIAEAPEKTPATLTSNSHPTETVRVLDLSDPRNPKTLETFNKVTGILPDGNHGLIYLTNNDGLWVLRYNRPPALEPARKKPPCDSESAIMAMPPDCE*
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