NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049084_10020748

Scaffold Ga0049084_10020748


Overview

Basic Information
Taxon OID3300005585 Open in IMG/M
Scaffold IDGa0049084_10020748 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2623
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014847Metagenome / Metatranscriptome259Y
F028095Metagenome192Y
F028145Metagenome / Metatranscriptome192N
F074576Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0049084_100207482F014847AGGMEYESNADILNDLMDQIHTLHKENAKLRQEVEQLKEINSELNRKLKSIQALFL*
Ga0049084_100207483F028145N/AMKIFLVFFINLAVSLFASILLYKLFKIDISPVTISLATIVIYICLPQRFHDWVSEK*
Ga0049084_100207484F074576N/AMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNTK*
Ga0049084_100207485F028095N/AMSEQTYMNLKDAVKRPKLSKEMVINPVNRENKDFKRVVDQYQKWCSTVGGYKDSRVTYENDIIDCLFETDTDGYALATFLKERAYIEPDSELVDILDCVSNVKYSLTKQIIGQWTKENFLEIPSDVIGKKVSAKQGYKKYENHYITTIRPDTYEVTISDNINKKGGYIVGFENVTLL*
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