Basic Information | |
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Taxon OID | 3300005585 Open in IMG/M |
Scaffold ID | Ga0049084_10000038 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 46108 |
Total Scaffold Genes | 66 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (72.73%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F082697 | Metagenome / Metatranscriptome | 113 | N |
F099291 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0049084_1000003818 | F082697 | N/A | MNYEDLDPNEQIVLQKQLEEHRKQILSMEVDEILERLVKMHDSTDVIIEGYDLVANINEGHGIAVAGLIRLRTALMDSVEWIGHNLLLEDVSESEDL* |
Ga0049084_1000003820 | F099291 | N/A | MVSLICSYSFAQSNITMELKDAPVRTSLEMIFKQAGIKSYVIDNSVYGFVSMNLTDQPFENSLKLVMRANTVPLTYTKENDVYIVKTRVSTEYKQSTPKITIEQPRGVVFEKIYLNHIDPFDLQSVLGNILFINQFSRFTGGINGMGGFGGGRNF* |
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