NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049082_10000834

Scaffold Ga0049082_10000834


Overview

Basic Information
Taxon OID3300005584 Open in IMG/M
Scaffold IDGa0049082_10000834 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9237
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002598Metagenome / Metatranscriptome544Y
F007263Metagenome / Metatranscriptome354Y
F026557Metagenome / Metatranscriptome197Y
F056558Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0049082_1000083410F026557AGGMINSVLSIPCEECHATGLIFFGDEDNFDVETCVCDFGMEQDLNLFNTPEAN*
Ga0049082_1000083421F056558GAGGMGILDNLENAWEKELSIESKPMPVTDNMGRQTFWEDMGRPENDGLALKIFKEECCSDCDCSD*
Ga0049082_100008345F007263AGGMINTYIDETKFYLIEDEQRYCCDELQFKYVCKAHGESMGCYFCEFDYSTTCEEQH*
Ga0049082_100008346F002598GAGGMATKLYTIQDLLIGKNYRSRNRHFEGEIISASPRPAIWYGENTEAYVIEIYDRTLRSKFATVAVKVGE*
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