| Basic Information | |
|---|---|
| Taxon OID | 3300005583 Open in IMG/M |
| Scaffold ID | Ga0049085_10009945 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3717 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.5046 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006844 | Metagenome / Metatranscriptome | 363 | Y |
| F019320 | Metagenome / Metatranscriptome | 230 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049085_1000994510 | F019320 | N/A | VSLMPNEDGNRMADWSDWHVVGGGRWSNSPYENSSDMIISYAEKPDEFKKTIENIKRYRINYMNDKLIKLDNAFDNLKSDVVDYISNDCKLDDKRQFDFSRWEIKEAIDMLNSQWTCDSAFFDHNEFTSSLQYIEERLDKPEEAALHYLVPVDFHF* |
| Ga0049085_100099457 | F006844 | AGGAG | MAKWEIEVIFEPTGTYMNFEYETDNEDEDSIFNEITNQLSIVPFLVEKNEEE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |