NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049081_10014023

Scaffold Ga0049081_10014023


Overview

Basic Information
Taxon OID3300005581 Open in IMG/M
Scaffold IDGa0049081_10014023 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3031
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003658Metagenome474Y
F005558Metagenome396Y
F008237Metagenome336Y
F015702Metagenome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0049081_1001402312F008237AGGAMTIEWSRIERWQYIVDAVASDYHRKFSPIEFDDIQQSLYQWFVEHPNKLDTWEAIGNKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFYYEADMVEAILPSVLRGEFGLGAKVDLGRPGRPSAPNEGGNMMAMMIEVDYAFWKLPKDDRKVLFLRHAESMDFGAIATELQLGSEDAARMRHKRAIRKLINKIGGFRPFRDEDEVQSPSNEDSAGSE*
Ga0049081_100140232F005558AGGAGMEQESISWGELAELTHATQVARFNFCMCEDNEGNENPYNDCPKTGE*
Ga0049081_100140235F015702GGAGMIREIELDYTVNNLVRLAKDKWGDNATEYLAGRLESVITYTQMKALIEGLTKEKG*
Ga0049081_100140239F003658N/AMFDLQGEPTFACICGCLMFEVTVMWDMEDRTVGWYDLKQKCKECGSLSTAPTPIDGDDDAYL*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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