| Basic Information | |
|---|---|
| Taxon OID | 3300005581 Open in IMG/M |
| Scaffold ID | Ga0049081_10000037 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 47995 |
| Total Scaffold Genes | 78 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 66 (84.62%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005167 | Metagenome / Metatranscriptome | 410 | Y |
| F008806 | Metagenome | 327 | Y |
| F009741 | Metagenome / Metatranscriptome | 313 | Y |
| F010448 | Metagenome / Metatranscriptome | 303 | Y |
| F014843 | Metagenome / Metatranscriptome | 259 | Y |
| F019092 | Metagenome / Metatranscriptome | 231 | Y |
| F025484 | Metagenome / Metatranscriptome | 201 | Y |
| F035737 | Metagenome / Metatranscriptome | 171 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049081_1000003713 | F025484 | GGAG | MDDGDGMMTVELQAKKIADNLIRYNGSSPCPTCGMIMNPVEFMANRGHCTPCTAQRNASRVRKGMA* |
| Ga0049081_1000003715 | F009741 | GGAG | MTQYTDGQYDRTKPWNAFRSPVKPDSVAKKYSYNGPWATNAERLTQQALMVMSIPGVDIQQMVRPPLPQIQLFPERYGYGDRSQPGIDDIVTIDRNYTEPRVSWFSGGVSGYQAAERNALGST* |
| Ga0049081_100000372 | F014843 | AGGA | LNILVSIDGVLSSDSGEPIRAGVALYYALNINNRVALMTSRKTADAEHWLNSHGIINYDDLIDHSFHLEGEDLKKRQFVMSRSRAPIEMYVDSDPLMCAWVFEEQGIPAVMFMNPGYLAVERRPDAPKKVRQWGEIEEAITRVNVAKSKDAANPKDLEFWSD* |
| Ga0049081_1000003729 | F035737 | GGAG | MTNREFIVNDGDWAHELETGVADYTDMLFEAVYEGSEDEIPETLSKELFCGCAECFWREALFYLVPRLLKGYNEGKIELLEE* |
| Ga0049081_1000003740 | F010448 | N/A | MKNGDISNVSSPQIVCVTDLVIGLAEVETKTFLSKKISFKIGKIDAQNANKLWIMSNKYEISLELAGFESEGWTEELLDKAFDTLERRVVNPFNYWQLYEDVDELIVGLPYRPNLKAVLDIPNRVARYGSAGVQIDNI* |
| Ga0049081_100000375 | F019092 | AGGAG | MSNVPILGQKKVEANEPMFRLLYCLVCQTLDELPPYDGEPELDMLLAVACENHVFPSGEPHKGKLFVLPLRSWADFKSKQEIIRQIKGGGSKGLAEIDDTFYESRSIFMEDAMSCYRRHNQPKDGCPEWHDEKKMLIPNTEKERRAEGMEKYKDSPGQKTYLCDFCPVAIGVAQRKQKLMGMN* |
| Ga0049081_1000003761 | F008806 | GGAG | MTINFLLSEDQALKTLLTGMTVTDQKAGSTQITTRPVKVWFGQPDQEITTQMYPYITIDMIDIAEDVMRAMRGKAQPHYMAPPLGVQNANQDGTWEVDYPIPVNIDYQITVYSRQPRHDRSILAQLLGTKIPLRFAVLDTDDGTYRRLDVLDVSKRDITESGKRLFVNAITVRVSSEVQPSVFRVFHKVSQVNLTGTLGTFTQGSTRYPFEAVESFTLPE* |
| Ga0049081_100000378 | F005167 | N/A | MNASLDEGATDGKYRKVRPDTEVGMGSHDTLANRQTLHSFYGYGFINTDYPNKVNPGK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |