NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0058697_10010849

Scaffold Ga0058697_10010849


Overview

Basic Information
Taxon OID3300005562 Open in IMG/M
Scaffold IDGa0058697_10010849 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3010
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea basaltis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010980Metagenome / Metatranscriptome296Y
F019098Metagenome / Metatranscriptome231Y
F023994Metagenome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0058697_100108492F010980AGGGGGVPRYLLINGTEPRWRLHDTVDSADLEKSLARVMEHGVVTYTLASRNEGETFQSLTIDGKDLVTYVITEEDDPDPAKTRSRYEAAGF*
Ga0058697_100108496F023994GAGMRPDIDGDQTIGRFSTPARRRQEVWSPLSYCPRSSLPAAMLAWLAARLAHLLPSRPPGTGGTPPLPLEVRLDAVAAVLLGGPSYRRAGRAVGVSKTEVGDSLDLLLGELGALGFCQPDGTFITTLDDLRRWLSEMAAAGEATVVDGLATRVQRPRGWANQKVLYDAKRHTHTAQGLAVSTIWGDLLWVDGGWPAPATSTSSSSW*
Ga0058697_100108497F019098N/AVEQSIAHLANAWALRRRCGLLYRVRDVFGVAGVLICLCRWLHPVPT*
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Institute for Fundamental Biomedical Research
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