NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066670_10148960

Scaffold Ga0066670_10148960


Overview

Basic Information
Taxon OID3300005560 Open in IMG/M
Scaffold IDGa0066670_10148960 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1365
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022301Metagenome / Metatranscriptome215Y
F063885Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0066670_101489601F022301AGGAMSLKPLLVQAVILVVVCSAGAQTSGCEVPDEMTKAQKLPCIRAARILLDQPVLSPIQITNGPDFDAAQPQNTRFAYFTDADNIACYFRPHYAFVKVPGDSMKFQCWHMASNQAFYSSKGETIPVEDVKVEVTKNKSGEKEAKLFHREDGQNQHPIKAEHFKVKYLKPAYPGHDPRFNEVFTTVAASRIMWLLGFPADHVYAAASASCIGCGDDPFGKKLADNKASLKDPPATFKVVSAERELPWDEINPEDDETWSWTDAAKFYSDGEWTHQQKVEYDGYRLALGLIHYNNALPQQNRLDCAEWEQQGSGHPKICKKPVIYVHDLGSTFGKKRSALDLFGTNPRGSFS
Ga0066670_101489602F063885N/ALLCQLSDQQIEELFKASRVAQKPEYHNHDGSFKSGVDEASIIRQWTEAFKQKREDLAKGRCQWKDRPSDLKLIDNPMGLATVPNFCSAKPF*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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