NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066704_10002939

Scaffold Ga0066704_10002939


Overview

Basic Information
Taxon OID3300005557 Open in IMG/M
Scaffold IDGa0066704_10002939 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8085
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000173Metagenome / Metatranscriptome1777Y
F001983Metagenome / Metatranscriptome608Y
F009571Metagenome / Metatranscriptome316Y

Sequences

Protein IDFamilyRBSSequence
Ga0066704_100029391F009571N/AMDTITHGIAGALIGKAIFRGEDLFASHPMNRGRILTWSLMLGAIFP
Ga0066704_100029395F000173GGAGGMKSFEVQFRYQDRNEGTVESTVKVDASSLPGGVAKATREFVKGLDRKQRFDMNKNGLEITAKAVGAATEVPAKTSTEAAAG*
Ga0066704_100029396F001983GGAMTRKNTWAGLAVAVVLSLPLTACKDAKTLQENEQLKARVAELQKENGQSGNELETMTAARDALTKENEALKAQMKACKTKHSGKKATSRTRRRR*
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