NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070695_100000712

Scaffold Ga0070695_100000712


Overview

Basic Information
Taxon OID3300005545 Open in IMG/M
Scaffold IDGa0070695_100000712 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17759
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002369Metagenome / Metatranscriptome566Y
F005735Metagenome / Metatranscriptome391Y

Sequences

Protein IDFamilyRBSSequence
Ga0070695_10000071213F002369N/AMATPGPTPWGRETRVVQKQTANQIRRIEELQGYVRTVDHVRKLVAELEANRAAKPKILNNICGSIARELSHMRQRALTANLGTLPDVAGQLAIIANRAGTGLNMKMRALADGVNSMMIQLDQALKSAHEVSPEKEKDKDKKENEPS*
Ga0070695_1000007127F005735GGAGMRLGLVAVLVVGALTLVGRDAEAQARGTLQATATVVDTRQGFEALSIVRQTVTNSRVESQHAVTTVAQISTQRPAAQPSTMVVTVDFSRN*
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