NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070731_10001744

Scaffold Ga0070731_10001744


Overview

Basic Information
Taxon OID3300005538 Open in IMG/M
Scaffold IDGa0070731_10001744 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21885
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (83.87%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000801Metagenome / Metatranscriptome886Y
F001829Metagenome / Metatranscriptome629Y
F023438Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0070731_1000174427F001829AGGAMKKHYLHLSAYRCNACDGPIIAGSTTVRESEISKETDIAHVGAICLSCGHRQDNAIEPALARHLLPIAWEPAGAINSRHLTAAFVEALNRAELH*
Ga0070731_1000174428F023438N/AMVVVKTEKLTLRHILSVRCPMCHAKPEEQCTLTTGHPCTKTHLARTLAAAQAPPPGSLSRAAVRVAKEVTSSSFRALFHHK*
Ga0070731_100017449F000801GGAGGMPAREWTVKELMEALKQFPPDATVYYEMGPNGPGAIGKAQYVKAWGESGEMGVLLDR*
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