NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070731_10000290

Scaffold Ga0070731_10000290


Overview

Basic Information
Taxon OID3300005538 Open in IMG/M
Scaffold IDGa0070731_10000290 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)80016
Total Scaffold Genes87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (55.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005031Metagenome / Metatranscriptome414Y
F009094Metagenome / Metatranscriptome323Y
F059479Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0070731_1000029011F059479N/AMEDIREALRDGLREEAAPISRRLAEVKGLSNNTIGRLERLQATIESERSARVDDLTLLVDLLTGGWRSLNERLDRIEAQLTSGTQPGAEVYRLPTAETG*
Ga0070731_1000029016F009094N/AMAMCHVCRRSLLAGERYRVWRWARRDRAVCAVCEPEARGAGWVRVVDTYERVRVTGLTQTVRRVA*
Ga0070731_100002902F005031AGGGGGMTGVRRGARSVLKYFAPLYVVLIVIQVFLAGEGIFRLHNISNSDDCNKHGAAASACLGNSKTLDAHRALGFILTFPGALLFLICALLAWHPNTRVRIVSIVVAFLTFLQTFLAGIGGFVAGGLHPVNAFIVLGMYGWLTRVLRQEQPESAGAAASVAVPAG*
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