NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070679_100289940

Scaffold Ga0070679_100289940


Overview

Basic Information
Taxon OID3300005530 Open in IMG/M
Scaffold IDGa0070679_100289940 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1588
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Dolichospermum → unclassified Dolichospermum → Dolichospermum sp. UHCC 0315A(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065097Metagenome128N
F068110Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0070679_1002899403F065097AGGAMPNHPNTDNENEIASLDAEDWEIAFKPYFGYPDAALDLARNLMTIRECLKTTPPDVPTAVAALNEAADSLFPLTNFHKGAHDLYRTYIEGRATRAHEALMQSLGVKF*
Ga0070679_1002899404F068110GGGGGMHTSDKNRVLERRAAMMARLLQVHDDAAGEGTDEGAMIVTLEGYISGIPEFFTNDCHEAFRFKDREQAESFVAEFVTHY*

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