NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10001545

Scaffold Ga0068876_10001545


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10001545 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17940
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005584Metagenome395Y
F006138Metagenome / Metatranscriptome380Y
F019290Metagenome230Y

Sequences

Protein IDFamilyRBSSequence
Ga0068876_1000154516F019290N/AMEGQSFWGTTNLKVASAVAAFGAKLRPVDPVTRVIRDGREQVTFWFISDGNGDIPKKEMERTWVEMQSDEEAPIRYVRAALENRETLLGLVKRAEPIRIIQIGGQTLMVPENASLERKKALLRHI*
Ga0068876_1000154517F006138AGGAGMAAVTIGQAGLVFGVTTEGIGLVQSFSETRNIEKNEIRNNVGDIVGVAYYNATTGYSLSVAVTGSYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTVDISATGYPNVS*
Ga0068876_1000154524F005584AGGVGGSIPTSYFGTDLNYMITDLWQSVTGLGSNAVSASVTDLATSSELDVGGEVFRITQSVVVCASMVSAPVIGSLCTVSGVERMIAGFTESTDGLSYTIDLAEITT*
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