NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066825_10017129

Scaffold Ga0066825_10017129


Overview

Basic Information
Taxon OID3300005510 Open in IMG/M
Scaffold IDGa0066825_10017129 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2466
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001582Metagenome / Metatranscriptome668Y
F002716Metagenome / Metatranscriptome535Y
F004956Metagenome / Metatranscriptome417Y
F005495Metagenome / Metatranscriptome399Y

Sequences

Protein IDFamilyRBSSequence
Ga0066825_100171292F005495N/AMLKWNGGSNTANLKMKKYKILQDTMANGQKVHAGDIVELPDHEGHTLCAYNKAEETTAKPKAKKVDRSVGLETSEVKAPKKRAKK*
Ga0066825_100171293F001582AGAAGMPLESAADFNSYVDVNTGHGVTATFFEVQNSLWDQRLGLIDTWYDIDSGNSTNINIIIDQEYFNIEGGTVPVAGYQPRAIVKSSDVPYISQEDRLVVNAITTDQGNVLKAETTFFVKTVEPDNTGLVSLVLEEQ*
Ga0066825_100171294F002716AGGAGMSQFRLETELDMAGYLDIDYGHGVSAVYTNSGGTAATINVILNNEYVEQEEGIGVEALKPIAYCRTVDIPNIAFGNRLDISAIKDVNGNVLKAAQSYTVVNIQSDRTGFSALMLEEI*
Ga0066825_100171296F004956AGGAGMKMISPDGNISIEAHPSKVESYLNMGWKEEAVHSQDKVKSSSKKKSKDEVKEN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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