NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066868_10026046

Scaffold Ga0066868_10026046


Overview

Basic Information
Taxon OID3300005508 Open in IMG/M
Scaffold IDGa0066868_10026046 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV259
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1880
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021405Metagenome219N
F077791Metagenome117Y
F081442Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0066868_100260461F021405AGGAMTEEILEVDEEKLVYRIEYIKQKLLQISTALRGKIPPDLTDQDLTEDNVFKQWVIVNSIYDAANCDESNESFNRMLYYMFDKSKGNIARLVNNYDINIKLNDAGQLEDMQLVVLETETAEEPNDE*
Ga0066868_100260462F081442GGAGMGTFKKDMRKLTREEIADKPGRLAGQIILNQLHDNKFHMWFIGNTEGNQLYTVTLSNEEKAIVGFIDEAIASNYINRKNIIAQINRSFGPQVVLVNLSLHKIHEVMENNFSASVQITPSTMTHQLTKQPIQTVIVNPNDHDFFVPLNIPYIIKKYTENIEVGDVDIENHKDEKELSFYEIDKESKRYVFCPEGPAQHGPEFGGI*
Ga0066868_100260463F077791N/AQTLIRLGLFDGMTFCDKEFTRKSLCEITDIYNTFTLQTKKNFKQLMEKIFDDEELSFNDLFEESKIVVLMDSFNVDPVEEYKEKELIDFELKYIGFRISENQERIQYMTDAVNNLEIKHISEYNDEDEDLSLFWTKISTVEKLTTKKGKPYANVRAEDGSSFRVWHNKLQFCEEDLVPGKIIAVKLTSDTFGRQLAWDRYSLLNEDNILKLQEELY*
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