NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070678_100408591

Scaffold Ga0070678_100408591


Overview

Basic Information
Taxon OID3300005456 Open in IMG/M
Scaffold IDGa0070678_100408591 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1181
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001755Metagenome / Metatranscriptome641Y
F013781Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0070678_1004085911F001755N/AMTLTMRPTGLGSGADKDRPDYGVYSGEWNIGRIYETRGGPDSLRWFWSMTVIGPMTRSDRVATLEEAKAQLRKSWDAWKVWAKL
Ga0070678_1004085912F013781GGAGGMTGAQFEISIDGVPRTYRDRKDLALLAAQILKSKNPNSVVKLKDLQTGEEIVVAFNKKT*

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