NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070714_100000069

Scaffold Ga0070714_100000069


Overview

Basic Information
Taxon OID3300005435 Open in IMG/M
Scaffold IDGa0070714_100000069 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)93567
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (69.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000969Metagenome / Metatranscriptome818Y
F051579Metagenome / Metatranscriptome144Y
F089720Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0070714_10000006920F051579AGAAGMARMWPWCCTRIQPGEAETLQRLNKMSAPEWKSFIAAHKDSILFVDTDADVLKAVQAEPGALGLIEVHSIDNSVNVVHVDGKLPMELGYLPH*
Ga0070714_10000006982F089720GAGGVITQRSLSSAEICAQIKKFGYEMSQSIRIYGEDFEVLSDPFASDGGIAVQVRSKRTSQTRILQLPATVTHRVSERRFPRAA*
Ga0070714_10000006985F000969GAGGMVNDDVVKCPLCNGFTHIEHPELLVALKNPRLREQIEQYIAELLKSPVEELTTVGPAQPGRDFQKEVHSWNPCVPMWKRSPKE*
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