NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066830_10004923

Scaffold Ga0066830_10004923


Overview

Basic Information
Taxon OID3300005433 Open in IMG/M
Scaffold IDGa0066830_10004923 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2445
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008424Metagenome / Metatranscriptome333Y
F015742Metagenome / Metatranscriptome252Y
F016667Metagenome / Metatranscriptome245Y

Sequences

Protein IDFamilyRBSSequence
Ga0066830_1000492311F015742GAGMDSKKAYEQIKEEIVDRESAYLCTELERALDRIINYTDPLDETMFRDIKAPAIKLLKEWHL*
Ga0066830_100049237F016667N/AMEMKLNKNLKRVLVTVALVSTGFALGTQNGEQKILDRWENRWFESDWYDTRSIEDFLYDTDYSIELGE*
Ga0066830_100049239F008424N/AMEKKINILERLLYLTLIAGICFFTGVFYTYYKIDQRLWNEEILKARDIETRYLNYPTKRNYKRDDLERIIYGKER*
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