NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066851_10189205

Scaffold Ga0066851_10189205


Overview

Basic Information
Taxon OID3300005427 Open in IMG/M
Scaffold IDGa0066851_10189205 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)649
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027156Metagenome195Y
F029745Metagenome187Y
F040056Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0066851_101892051F027156GGAGMIPKVGQLLRWYDNFTFDDDGPHHDVGIVKEVQLEGENFFGNDEYQYVVVVDWCKGPHHSYHDQEEWEESIRTNEIVVV*
Ga0066851_101892052F040056GGAGGVQTQADFRIGTLLRWHGDDQEGDDIDELGIVIQMPGETAYYYIAWGTTNTVSHHTPDMVEESLYQCQMEIVG*
Ga0066851_101892053F029745N/AVVKSRVTTESVAGFIVGKEGIHVWVRFFDTALEGESWDVFTRRDTLEVLSRANAS*
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