Basic Information | |
---|---|
Taxon OID | 3300005402 Open in IMG/M |
Scaffold ID | Ga0066855_10252507 Open in IMG/M |
Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 577 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005071 | Metagenome | 413 | Y |
F011673 | Metagenome | 288 | Y |
F023876 | Metagenome | 208 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0066855_102525071 | F023876 | N/A | LDEDCFEGKHKKFGYPYKVYVDVEATEERNNGKPQYRTATHKWEINEQPTI* |
Ga0066855_102525072 | F011673 | GGA | MNNQQSKVLPIYLQPRILSAVSYIHQSPNKEIGLERINKVSRKLSDREMLYVLSLLAFDNLLDLVRDSEDFKKFVVDKKERTIH* |
Ga0066855_102525073 | F005071 | AGGA | MTQLNTKEKCTLRDLIKIEIKSLTKEGYGKFKYFENEYCDFLLKLGRKLKLDTQQKIKAKKV |
⦗Top⦘ |