NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074242_10305256

Scaffold Ga0074242_10305256


Overview

Basic Information
Taxon OID3300005346 Open in IMG/M
Scaffold IDGa0074242_10305256 Open in IMG/M
Source Dataset NameSaline sediment microbial community from Etoliko Lagoon, Greece
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)12108
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (42.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameEtoliko Lagoon, Greece
CoordinatesLat. (o)38.482158Long. (o)21.313175Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008401Metagenome334Y
F041166Metagenome160Y
F047651Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0074242_1030525613F008401N/AMDSFKLLTIAQAAEHLNCSTGFIRKRISLTEANQPGGWPKNVYVNLQPKGAKKLYRVRKEALDQYISGQLEQAKMEEVASPTSSEVCSTGTCTF*
Ga0074242_1030525617F041166GGAVVSNEGYPDNGGLYTSAFGIYVYAPNQAAPSTSAAMLLGKFEVGLSGGTEGLIQRIELPATNAPVPGVGDTNLARPIEFGKMEGLYLEKGYILCVGYLGNGPNAVSGGLSGSGVTWLAQGGFY*
Ga0074242_103052562F047651GGAGGLFPVIQAITTAQESLWFDTNEGRLFVYASGATVSDPAWYQTNAEAIAIKSEVPPSGTGLNAPPRDGLIWFNSLLGSLFIYDSSTSGWYETGPQRSFAYSSSAPPPSVEGAGWFDTITNRLKVWDGSNWVDIDIDGGVY*
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