| Basic Information | |
|---|---|
| Taxon OID | 3300005346 Open in IMG/M |
| Scaffold ID | Ga0074242_10017698 Open in IMG/M |
| Source Dataset Name | Saline sediment microbial community from Etoliko Lagoon, Greece |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5021 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Etoliko Lagoon, Greece | |||||||
| Coordinates | Lat. (o) | 38.482158 | Long. (o) | 21.313175 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F055287 | Metagenome / Metatranscriptome | 139 | N |
| F080647 | Metagenome / Metatranscriptome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0074242_1001769811 | F080647 | N/A | MIETFFFTSMFIFGLWLSSAEGMILDDLRWRFISQFPELAKPVIDCPTCMASVYGTIAYWGDVIIANQPVDVLTAIGWPIFVFCLAGFNGIILKLAKWS* |
| Ga0074242_100176988 | F055287 | N/A | MNWLGFVSRHWGILALVVAFLLGKQSCNYKAEAERHKSNYEAIQQTTGSTARRLNLTVEQLTAENKRLLDSLKVKSGKVQFVYVTKWRTKTDTFEVEVDRWHIDLMPCPIQSFTVDTNCIKLTALLYPDSAAKVTLTTDYQISVVGYWKRPGKWFGAKLWNGLLGKKEAYIKIASPCFTDSAVYLNKFSQAQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |