NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070687_100403661

Scaffold Ga0070687_100403661


Overview

Basic Information
Taxon OID3300005343 Open in IMG/M
Scaffold IDGa0070687_100403661 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)897
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059194Metagenome / Metatranscriptome134N
F065761Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0070687_1004036611F065761GAGGMKPTAFRIERLLAKVEAEVARRGLRARRYTFHPDEVAEAEAQGLPYALLPRVLSKREWLERYARPEAEAEFYARLRGGPVAF
Ga0070687_1004036612F059194GAGGMRKDFEQNFAGADESDVGPPPRGRSPTARERPFKLGPLGTLNQIIVALGKTIRAMADGTLDSQVGARICNGLGIMRACLEIQKLEQLESRMDEIADRVAHERTGAARERTSTHEAHRLSH
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