NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070660_100708114

Scaffold Ga0070660_100708114


Overview

Basic Information
Taxon OID3300005339 Open in IMG/M
Scaffold IDGa0070660_100708114 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)844
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018203Metagenome / Metatranscriptome236Y
F027528Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0070660_1007081141F027528N/AMRHEGDVRIKLSRAELTAAREAIELTPHFEGRIDVRDRLRGAVRSRSHSVALEREVAERFVRRLVAVDLPTVLLRTKLLLAIQDADRQVPDQRPAAEPPARAA*
Ga0070660_1007081142F018203N/ADTVDMRPAATVRVKWTRAELLALREAIEVTPNFEGRQELRDFFRTAVRAHRLGDLELEFGIAERLSNRLVPVDLATATARGKLLHAVRGPRKRGIADVRRPQRAVAA*
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