NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070682_100000002

Scaffold Ga0070682_100000002


Overview

Basic Information
Taxon OID3300005337 Open in IMG/M
Scaffold IDGa0070682_100000002 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)506802
Total Scaffold Genes445 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)255 (57.30%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039817Metagenome163Y
F041799Metagenome159Y
F061939Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0070682_100000002235F039817N/AMPDDSLRNLPERTGKHRCIRCLAETQAEEYMRNDHLCDACAADGDYPLASTPEPKKNGK*
Ga0070682_100000002268F041799GGAGGMPAAIDETTVTVKGSPVRSLQRFIDNDLSQEQRETVFRGLPPEYATRFRSPILATETIPVHMLNRLTEEAAKSKGEAVESFARRAGREAAADAIKGIYRFFALVMTPQALLSKASQMWSSLYNRGELKIDQQTDKGARIRLINFPSELAGCARITGWIERMAELTGAKNVMVNQTGCFVKGAPHCEWTVKWS*
Ga0070682_10000000280F061939AGGAGMIRSRGILIAALFALFATGCFEVEQSIELKKDLSGTANFKLGVDMEPMVMIMAKVQKEMGGDKSPLTAAEIAAAKADFKKNEKKSTTTTEDPRKEAEGGLPPGVKLLDVSVKEKEFGVTTNMKFAFDKLSSLVGVKLGKKKEEGEGPADPMKKSVLDTPFEGLEISETASTISIHTKPQNPAEKVKSQASEQAPKLDPETEKMMNDAFKNMRVAWKITAPFDVVSSNATRKEGNTLIWEYDFEKLQKLAASKKGLDDMGVRVTYKK*
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