NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070677_10012309

Scaffold Ga0070677_10012309


Overview

Basic Information
Taxon OID3300005333 Open in IMG/M
Scaffold IDGa0070677_10012309 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2970
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030072Metagenome / Metatranscriptome186Y
F069981Metagenome123Y
F079767Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0070677_100123094F079767AGGMTDPRPPLPTSSSVRPALGLLAGLGVTVLIIFLGVTISTLAALRGVDARTYVAPFWTYPTHLLVSFLGAWAGGFTTARITHGRTLFTTLVLALILLMSALAPVLRHRPGAPGQPEWYALSIAIVSPLGALLGGILERRRSRTSPATA*
Ga0070677_100123095F069981N/AMRRLAIPALLVVMLPLCVAAQAPDDSTKGYVHISPAVGFHWGIPLKFSVAAGGLFDFRGPHNDGIIAMGEMGQGGAEASVGYFRMIRFGQGFDVRVAALRTGPDPRSAAPETTYLGAEAHVMFLLGIGGRVGWFRRASPYSGSNTYDNVGSFRVSIGL*
Ga0070677_100123096F030072N/AMRDIDWPLAITLAVVFVVMSVVRWRYFRSVARRRARLPKGDDTPR*
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Institute for Fundamental Biomedical Research
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