NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065705_10244491

Scaffold Ga0065705_10244491


Overview

Basic Information
Taxon OID3300005294 Open in IMG/M
Scaffold IDGa0065705_10244491 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1209
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location NameEast Lansing, MI
CoordinatesLat. (o)42.794771Long. (o)-84.393804Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001127Metagenome / Metatranscriptome769Y
F054656Metagenome / Metatranscriptome139N
F058276Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0065705_102444911F001127AGGAGMETYVEQYQAKDGGVTLHTWTDVQGEKKENFYITGVSGTSVAAWFREVLRTKHLADIADFPYAPSRFYA*
Ga0065705_102444912F058276AGGAMSHALIEKPGRFRVLQTQYAAFITEQSIVTDHVISTATTARLEAIDLELFRWESVHKDEIKAFGGIGTFTTPTGPGVFPSTGLESAAGALRWAGASARNPC*
Ga0065705_102444913F054656N/AQLFEDFVHFAAKQGSGAVYHRDPHQAVPPGCVFVRFRSPGGEGFTSAGIVQFRQREEGFIACKTFVASCDKPLELQMNFPREFPQNFPSPTFAEAHQVAKSRWLRWKRALGSWWH*
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