NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074072_1000042

Scaffold Ga0074072_1000042


Overview

Basic Information
Taxon OID3300005260 Open in IMG/M
Scaffold IDGa0074072_1000042 Open in IMG/M
Source Dataset NameMicrobial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)74244
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (72.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Microbial Communities On The Surface Of Biochar

Source Dataset Sampling Location
Location NameSydney
CoordinatesLat. (o)-33.917926Long. (o)151.235347Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028212Metagenome / Metatranscriptome192Y
F047518Metagenome149Y
F048505Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0074072_100004224F048505AGGAGMNALTATLKAAACGLGALAITAVMSWSFVESTSTAPGVVPVAQMAKLTIQQRHVWFGQSQPAVLVD*
Ga0074072_100004267F028212GGAMDHIQFKANQTAAGYVANGLDESTQEAFELHMMGCSECVADVEVWRAIKLEMPRQHAQVRTLTPRRKLAAFSDWRMAASLVGAGVIGATGGWLGKATTATDLDSTRTVVFNLPSVSRGADECIAMRLASDTRLAVLRVPGISKDLRVVALDSEKRELPAGDYTSRIQPDGSQLLKIDAALLAGRQVHLEARRSDGTGEPLGCVTGVLP*
Ga0074072_10000427F047518AGCAGMDEARRIVRFRGGVSCRRDDPPLGLTLIGRTVDRSDEIATLAFVTAPPEGLPEALEDATVEQLADGQYRIWSGCREWIFTARSVHLHREVSAIFYRAIAPRLVPWKKRLFWRIVLAMAATRFGKSVLLTLRRR*
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Biomedical Sciences Research Center "Alexander Fleming"
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