Scaffold Ga0066685

Basic Information
Taxon OID	3300005180 Open in IMG/M
Scaffold ID	Ga0066685_10006054 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005180 Open in IMG/M

Scaffold ID

Ga0066685_10006054 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6351
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6351

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006057	Metagenome / Metatranscriptome	382	Y
F010456	Metagenome / Metatranscriptome	303	Y
F020525	Metagenome / Metatranscriptome	223	Y
F030712	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066685_100060544	F020525	GGAGG	MKRMLAALAAAAFMVAPLAAQSFGMPNWSSPKGGTGITISGDLGLPNSDLGNGTAFGARGSIGLANINLMAAVASWKPKGATDSYTSVGGQAAFRVIGGSLIPVSVSLQVNAARASAANTNPAQTRIGLGGAVSVNVPTPGLSIEPYLAVNNRWYKLSGISGTTSNVGWTLGANVGLGMLGFHLAYDSENTGSGTTGGIFGIGVHVALKAPIGM*
Ga0066685_100060546	F006057	GGAGG	MRKLFGGIVVAALALSLTTAAHAQRRTTSSASMGGAKHELGVDVGIAYIKPSNVSGGIGITTPFDVRFGFVPRSGKIMWEPRLTLDFSTVGGNTTYRFTPDVNVLYANSPGGHRRGMYFTGGAGLVMGDLGAGSGTAFQLNGGVGWRKPYESAAWRYEVGFQWVSSSNNLGPFADYFAIGGSIGISLWH*
Ga0066685_100060547	F010456	GGAGG	MRKLTSTLVAAAALVALPHLALAQRTRAAAAGGPKNEIGVDLGAEYNHAGSGCTADCGGLGIGTPIDIRWGFMASGPLSFEPRFSLSYLSGSASPIGGHVLAFNPDLNVIYRMKNSTARRGMYLTGGLGLGIANAAPSGGSSTTATQLSLNGGVGKRIPMESNAWRVEGFLRYNFENSGKGIPSSFNIGARLGMSFWR*
Ga0066685_100060548	F030712	GGAGG	MKRLGLAILAMALCMTATRTAMAQGHLRYGVQAGLLMPVSDYNTADKMGFIGGVGATYWLPGTGNIGVRGDVSYSSTAHKSPVTGNTKIIGGTASFVYALQPASAPARFMLTAGVGFYNLDFGGATPKQSKLGFGGGAAVAFKMGSSSSRLVVGTRYTSVATDGASRLTFLPITVGLSFGK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066685_10006054

Overview

Ecosystem & Geography

Associated Families

Sequences