| Basic Information | |
|---|---|
| Taxon OID | 3300005100 Open in IMG/M |
| Scaffold ID | Ga0072724_140955 Open in IMG/M |
| Source Dataset Name | Cold seep microbial communities from the Ulleung Basin, East Sea, Korea - Hemire mound |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Macrogen |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1319 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Cold Seeps → Unclassified → Cold Seep → Cold Seep Microbial Communities From The Ulleung Basin, East Sea, Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Hemire Mound, Ulleung Basin East Sea, Korea | |||||||
| Coordinates | Lat. (o) | 36.098 | Long. (o) | 130.0788 | Alt. (m) | Depth (m) | .1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031503 | Metagenome / Metatranscriptome | 182 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0072724_1409551 | F031503 | GGAGG | MDRSELIKLFKAAASVDGSGSIAALKDFAAALTIPILQKIELDSIMRGLFAVETLEAGAQASYPIADDMYDIPVWLLPGLGYVAQNFIEGMGEEVFIPTFDMAASADWKVKYALEGRVDVLQKAIAKVAKTIAEYEDDCGWNVIVPAVTSAWVAQGLLSGRPAPLYEVAPASPGAGYLSKELINKMIVGMERIGRKLTDLYISPEDAADIREWTDTDI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |