NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070431_1014342

Scaffold Ga0070431_1014342


Overview

Basic Information
Taxon OID3300005074 Open in IMG/M
Scaffold IDGa0070431_1014342 Open in IMG/M
Source Dataset NameMarine benthic sponge Stylissa massa associated microbial communities from Guam, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Utah
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4585
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated → Stylissa Massa Endosymbiont Microbial Communities From Guam

Source Dataset Sampling Location
Location NameGuam
CoordinatesLat. (o)13.4388546Long. (o)144.8224773Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003492Metagenome / Metatranscriptome483Y
F008424Metagenome / Metatranscriptome333Y
F015742Metagenome / Metatranscriptome252Y
F040581Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0070431_101434210F015742N/AMDSKKAYEQMQDEMIDRESAYLCTEVERALNRIIDYTDMLDDRSFNKIKESAIKLLKEWHL*
Ga0070431_101434215F003492N/AMAELLTDDIIIEHLNNDGIMQEPDGPWLLEYIQEEYGGKLDNTSDFVDDKWTLKIYSESTADCYDIYWCTHEDRPYISQDGYYYEDYAEWSDQAVQELTSGSDVWVDPCLWSDMEYDFNYELEQWWQDVYDELYDEKKNELLDSEDYYWEDED*
Ga0070431_101434216F040581GGAMEFLENFNGIKFIGNGNVYNGYLNQEQTWKEYREWALKNIYE*
Ga0070431_10143428F008424AGCAGMETKVNKYERALYLFIICGICFFCGVFYTYYKIDQRLWNEEILKARDIETRYLNYPTKRNYKQEDLKRIIYGTN*
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