| Basic Information | |
|---|---|
| Taxon OID | 3300004951 Open in IMG/M |
| Scaffold ID | Ga0068513_1004295 Open in IMG/M |
| Source Dataset Name | Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVs |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1487 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | East Sea, Korea | |||||||
| Coordinates | Lat. (o) | 37.0 | Long. (o) | 131.0 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004537 | Metagenome / Metatranscriptome | 434 | Y |
| F005848 | Metagenome / Metatranscriptome | 388 | Y |
| F032859 | Metagenome | 179 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068513_10042953 | F032859 | GAGG | LSFGGGGSGGSSTVAAHTHNSSLSGDGGALSASLTQIETSNLYSRMIVGA* |
| Ga0068513_10042954 | F004537 | AGG | MTFFSKPSINNFQINSGNVPLLYPVRVICAAGVTTGISFPDQFLGRAISLKISNNDSANASSYDYNLNGQFQNLAASNFATIDNTIVNYLTVTAGAAGTTLVEAQVIPASRDEVPIEVTV |
| Ga0068513_10042955 | F005848 | AGGAG | MGIPVQRTYLGTPAALNAPVFMVDQQTLQNNFLTLTPNVLQDVVNNPDPAAGLLYQFTLVKNGNATAVRAFSSAISPTTAGRVPIGPVNMSSGSYQWQLTQTLGVATATTILVRYGSPLN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |