NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071103_101624

Scaffold Ga0071103_101624


Overview

Basic Information
Taxon OID3300004870 Open in IMG/M
Scaffold IDGa0071103_101624 Open in IMG/M
Source Dataset NameMid-Atlantic Ridge North Pond Expedition - Sample Bottom Water CTD 2012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Marine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4785
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location
Location NameNorth Pond, Atlantic Ocean
CoordinatesLat. (o)22.78Long. (o)-46.09Alt. (m)Depth (m)4350
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058539Metagenome135N
F070688Metagenome123N
F095607Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0071103_1016242F058539GGAMITRQKTSRKRTFKEIRYDKILTRQQELILESSMALAESLRMEVKSLRQVIFDQDDLQRELGIAPIEVTGQQQNVTSTGEFNAAELIASVAKGLKPDNIPGGRVALDAFQSFILSNKNEVNALGSHYISQAMPKKDVAQNQVINQ*
Ga0071103_1016244F095607GGCGGMPFSIVGFGESEDRSGVPTAISPFAGDTISDVSGDELRISSIQNPAIAWIYTKSDSASYPINDWKLSSPEIAAVPLLGTGGDSVGSDTYFGTQISPVQVDTRLFPSGYGMTNSSPLTCTMENDDESGVAHTASMVLAVVEQGESLMYNDGYARVDYYNRITGFSGNVTVNQWESYSCTSSGLTFNSLPDELVRIVNTRVEMANGTCYRWAFPGGSSSRPGGLVSNSNLSKTPVVNNFPTRSFRAITEHPQIQVVGSTAETILSVEISYQRV*
Ga0071103_1016245F070688GAGMPSVSVGTDPKKIINANRNRTALTINNIDGNTAIFLLDDITSTTATGSVQLTGGQSRNYNITSAQFGNNQDGTPRFSGQRKVTSAHYAVSNSGTNVVHYEEEYN*
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