NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0069134_163511

Scaffold Ga0069134_163511


Overview

Basic Information
Taxon OID3300004831 Open in IMG/M
Scaffold IDGa0069134_163511 Open in IMG/M
Source Dataset NameMarine surface microbial communities from the North Atlantic Ocean - filtered matter
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2219
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Surface Seawater → Marine Surface Microbial Communities From The North Atlantic Ocean, Enriched With Methanesulfonate

Source Dataset Sampling Location
Location NameLeca da Palmeira, Matosinhos
CoordinatesLat. (o)41.226956Long. (o)-8.720528Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F002374Metagenome / Metatranscriptome566Y
F024207Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0069134_1635111F024207N/AKARVRQLVNFMGIEGASNFLSQASGKNVMPGDVVQLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRPATRRASSTTLIKN*
Ga0069134_1635112F001611AGGAGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALTTGQPFGVLNGSYTNNDLITTGSQRNRVLVRFTNDTSGTRTIRCGVFIGG*
Ga0069134_1635114F002374N/AMNQVLLYAGFILASVSFFLCCYACLRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAMKQQSNVHDINKSNIGG*
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