| Basic Information | |
|---|---|
| Taxon OID | 3300004829 Open in IMG/M |
| Scaffold ID | Ga0068515_104018 Open in IMG/M |
| Source Dataset Name | Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1889 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South Korea: Pohang-si, Gyeongsangbuk-do | |||||||
| Coordinates | Lat. (o) | 36.03776 | Long. (o) | 129.386 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F062713 | Metagenome | 130 | Y |
| F070058 | Metagenome | 123 | Y |
| F100034 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068515_1040181 | F062713 | N/A | WLGIVPEFFARGVVAARFEGGGISTVADEMNSLYQWGGFDDHWRGDIDDDGVYRAPEDEPLEPFARVDFNGWTMWAYPYSIFGIKDSVGNQRVGRFD* |
| Ga0068515_1040186 | F100034 | AGGAG | MSTYLLTSREEVEEHRRRINTIRSAIEYDVVNSPLNTEFEELEVLLHDAVVKLDEIHDKMKEHVYVFDVTITVSRRVNVKARDEDDAEQAAMDFAINELDCSIDWNEDDVQVFRDEDEETTKVYDVEV* |
| Ga0068515_1040188 | F070058 | AGGAG | MIDTWYVVQRFNRKTWEWEERDSDGSSYNSTLDNAKYFCDSYIKDGEECRVIREEVVYDPDR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |