| Basic Information | |
|---|---|
| Taxon OID | 3300004829 Open in IMG/M |
| Scaffold ID | Ga0068515_101690 Open in IMG/M |
| Source Dataset Name | Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2846 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South Korea: Pohang-si, Gyeongsangbuk-do | |||||||
| Coordinates | Lat. (o) | 36.03776 | Long. (o) | 129.386 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012872 | Metagenome / Metatranscriptome | 276 | Y |
| F013704 | Metagenome / Metatranscriptome | 269 | Y |
| F014505 | Metagenome / Metatranscriptome | 262 | Y |
| F016957 | Metagenome / Metatranscriptome | 243 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068515_1016902 | F012872 | GAG | MDLHFEGNRLYYLEKEAELYKCLTYLSQELGNQEPMSQEQLWEVFNICSDTAAVYRHITDYFSTLDRLILDARIENGKMKQEVYDLRKENMKLQKALEGCMDGL* |
| Ga0068515_1016903 | F013704 | GAGG | MDFKRKMLNGQRFEINGMEFICLETCIALQTRVDGEEPDIEVGGSYYIVRNTSTGGLHKIPFKRIIEKEKDIKWKI* |
| Ga0068515_1016906 | F014505 | AGG | VANIENFYRENFKRLTGFIKEYTDGSYEVASDIVQMVFLRLLELEQEGRFNFYEGDSLNFFYVYRSCINTALKYQRTKKRINKVSLEDLTHDTIPDEDYPEYKVAMEKLLDIMEQEMDDFHWYDAKVMRIYMQGTSMNKLHRESDIGLTSIKNTIKNGKARIYEKVKEDYQDFTNGDYDKI* |
| Ga0068515_1016907 | F016957 | GAG | MQLHNYLKDKRKLTKARTKVCVEVGKTGEALFKEITGALKSNLEDDKKHIDFYWGEKLVDVKGLKKMHLSGYILLEFINVWGGNGWCSKKSKAEYIAFQFPDAFYVFRKKHLRVRAIELCEPFYKDKVERRNYIPYEEALHKWVGRWNAQDVFTYLKFEDVEDLIFEVLPYATTEEETERGEK* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |