| Basic Information | |
|---|---|
| Taxon OID | 3300004829 Open in IMG/M |
| Scaffold ID | Ga0068515_100727 Open in IMG/M |
| Source Dataset Name | Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4241 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South Korea: Pohang-si, Gyeongsangbuk-do | |||||||
| Coordinates | Lat. (o) | 36.03776 | Long. (o) | 129.386 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014726 | Metagenome / Metatranscriptome | 260 | Y |
| F068593 | Metagenome / Metatranscriptome | 124 | N |
| F088525 | Metagenome / Metatranscriptome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068515_1007271 | F068593 | AGGA | MTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQSRQGFTTGTNFTYRGYTALADSAMEKLQTVLNSGVLEIRFAQKLYYQIARPFVQCPAGFGIDVQSLASSRTGNAAETQPNGTNW |
| Ga0068515_1007272 | F014726 | N/A | MGFQSESIISAASQRFGVIDYTRWQAIRWQWYSYITYPSAGSTSLTFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQIAVNDVDGFTRANQATLDTRALASDYIGGFVQAGVLNFSVGARPFATIVKPFQYAPPPGSPLDLENTYVNQISAAPVPAAGAAQVVGVPWASQTKMRPNVYFTDPNILIEAEQQFTVTLDFPSGVVPVLATNVVNDTTNPLKVGVILDGLLLRPVQ* |
| Ga0068515_1007274 | F088525 | N/A | MILPIRQSELNAVGFQGYFPALSWRQRKEVAALTLNRVGRTQDAFLLEINNVNAVQGITYVADVPPLRAGR* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |