NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068515_100371

Scaffold Ga0068515_100371


Overview

Basic Information
Taxon OID3300004829 Open in IMG/M
Scaffold IDGa0068515_100371 Open in IMG/M
Source Dataset NameMarine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5857
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameSouth Korea: Pohang-si, Gyeongsangbuk-do
CoordinatesLat. (o)36.03776Long. (o)129.386Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001942Metagenome / Metatranscriptome613Y
F007417Metagenome351Y
F008281Metagenome336Y
F008595Metagenome / Metatranscriptome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0068515_10037110F007417AGGAGMTRYTLQVQLPSIGWVVAIKTSDLFYMASKRARLIAQGHKVKLTKESKNG*
Ga0068515_10037112F008281AGGAGMNLMCNTKHGAIEWRWKDSGQPSPAYKSLNHQWWIPKKSEFELVTKVDASIKQEIKDEIWEDMQSDFEYTKELYKLHKKIKRESK*
Ga0068515_1003713F008595AGGAGMSKEDNKMENQEPVIITFNGTEYRAADLNEEQMALAAKLNIAGKKLARLQEYYDDYVITDEYKNLCIQSFDRAINATNEEAEVEEEK*
Ga0068515_1003717F001942N/AVPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLMVEFGSAKYTVQVKSRRATKEKKFVFAAENSRSQSETYKHYTCDILAFVFFDGEEKRIMFKANTSSQNYFTFDKKAITESMELDSLKETLDNLSSVPVLNPLI*
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